org.ptp.DNABarcodes

DNABarcode

class DNABarcode extends AnyRef

General Barcode class

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Instance Constructors

  1. new DNABarcode(dna: String)

    Create a new Hamming EC barcode using the provided sequence as seed

    Create a new Hamming EC barcode using the provided sequence as seed

    dna

    the dna sequence seed

Value Members

  1. final def !=(arg0: AnyRef): Boolean

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  2. final def !=(arg0: Any): Boolean

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  3. final def ##(): Int

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  4. final def ==(arg0: AnyRef): Boolean

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  5. final def ==(arg0: Any): Boolean

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  6. final def asInstanceOf[T0]: T0

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  7. val barcode: String

    It returns a Hamming EC barcode or "NNNNN" if the DNA seed is invalid

  8. def clone(): AnyRef

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    protected[java.lang]
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  9. final def eq(arg0: AnyRef): Boolean

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  10. def equals(arg0: Any): Boolean

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  11. def finalize(): Unit

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  12. lazy val gc: Float

    Calculate the %GC content of the Hamming EC Barcode

  13. final def getClass(): Class[_]

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  14. def hashCode(): Int

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  15. final def isInstanceOf[T0]: Boolean

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  16. final def ne(arg0: AnyRef): Boolean

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  17. final def notify(): Unit

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  18. final def notifyAll(): Unit

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  19. final def synchronized[T0](arg0: ⇒ T0): T0

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  20. def toString(): String

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  21. val valid: Boolean

    Return false if barcode is "NNNNN"

  22. final def wait(): Unit

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  23. final def wait(arg0: Long, arg1: Int): Unit

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  24. final def wait(arg0: Long): Unit

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