org.ptp.DNABarcodes

Generics

abstract class Generics extends AnyRef

Abstract class to include commong functions for DNA Barcodes generation and verification

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AnyRef, Any
Known Subclasses
HammingEight, HammingEleven, HammingTen
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Instance Constructors

  1. new Generics()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
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  2. final def !=(arg0: Any): Boolean

    Definition Classes
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  3. final def ##(): Int

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  4. final def ==(arg0: AnyRef): Boolean

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  5. final def ==(arg0: Any): Boolean

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  6. final def asInstanceOf[T0]: T0

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  7. def calculateParityBit(codeLength: Int, codeBits: Array[Int]): Int

    Attributes
    protected

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
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    @throws( ... )

  9. val codex: Map[Char, Int]

    Attributes
    protected

  10. val codexReverse: Map[Int, Char]

    Attributes
    protected

  11. def correctBarcode(codeLength: Int, barcode: String, getParity: (Int, Array[Int]) ⇒ Array[Int], parityPositions: Array[Int]): String

    Attempt error correction on a Hamming barcode

    Attempt error correction on a Hamming barcode

    codeLength

    The length of the barcode

    barcode

    A string with the actual barcode

    getParity

    A function which calculates the parity of a barcode

    parityPositions

    An array which stores the positions of the parity bit in the Hamming barcode

  12. def correctBase(codeLength: Int, errType: Int, baseAtError: Int): Char

    Attributes
    protected

  13. final def eq(arg0: AnyRef): Boolean

    Definition Classes
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  14. def equals(arg0: Any): Boolean

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  15. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )

  16. def generateParityBit(codeLength: Int, codeBits: Array[Int]): Int

    Attributes
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  17. final def getClass(): Class[_]

    Definition Classes
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  18. def getErrorPosition(parity: Array[Int], parityPositions: Array[Int]): Int

    Attributes
    protected

  19. def hashCode(): Int

    Definition Classes
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  20. final def isInstanceOf[T0]: Boolean

    Definition Classes
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  21. final def ne(arg0: AnyRef): Boolean

    Definition Classes
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  22. final def notify(): Unit

    Definition Classes
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  23. final def notifyAll(): Unit

    Definition Classes
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  24. def quad2dna(hamming: Array[Int]): Array[Char]

    Attributes
    protected

  25. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
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  26. def toString(): String

    Definition Classes
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  27. final def wait(): Unit

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  28. final def wait(arg0: Long, arg1: Int): Unit

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  29. final def wait(arg0: Long): Unit

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